statistics

Internals of Mixed Models

Linear mixed models are widely used in Agriculture and Plant Breeding, as of recent. With access to genotype data high resolution phenotype data, it has become more of a requirement to use this family of model. Mixed models allow for experimental (design or outcome) variables’ parameter estimates to have probabilistic distributions – most commonly normal – with opportunity to specify different variance-covariance components among the levels of those variables.

Logistic Regression: Part I - Fundamentals

Likelihood theory Probit models were the first of those being used to analyze non-normal data using non-linear models. In an early example of probit regression, Bliss(1934) describes an experiment in which nicotine is applied to aphids and the proportion killed is recorded.

Correlation and pathway analysis with path diagrams

Background Correlation study is one of the most extensively yet not fully appreciated topic. It forms the backbone of several other inferential studies. Path analysis, on a similar note, is a derived technique that explains directed dependencies among a set of variables.